Lung cancer risk discrimination of prediagnostic proteomics measurements compared with existing prediction tools
JNCI: Journal of the National Cancer Institute, 2023
Feng X., Wu W., Onwuka J., Haider Z., Alcala K., Smith-Byrne K., Zahed H., Guida F., Wang R., Bassett J., Stevens V., Wang Y., Weinstein S., Freedman N., Chen C., Tinker L., Nøst T., Koh W., Muller D., Colorado-Yohar S., Tumino R., Hung R., Amos C., Lin X., Zhang X., Arslan A., Sánchez M., Sørgjerd E., Severi G., Hveem K., Brennan P., Langhammer A., Milne R., Yuan J., Melin B., Johansson M., Robbins H., Johansson M.
| Disease area | Application area | Sample type | Products |
|---|---|---|---|
Oncology | Patient Stratification | Plasma Serum |  Olink Target 96 |
Abstract
Background
We sought to develop a proteomics-based risk model for lung cancer and evaluate its risk-discriminatory performance in comparison with a smoking-based risk model (PLCOm2012) and a commercially available autoantibody biomarker test.
Methods
We designed a case-control study nested in 6 prospective cohorts, including 624 lung cancer participants who donated blood samples at most 3 years prior to lung cancer diagnosis and 624 smoking-matched cancer free participants who were assayed for 302 proteins. We used 470 case-control pairs from 4 cohorts to select proteins and train a protein-based risk model. We subsequently used 154 case-control pairs from 2 cohorts to compare the risk-discriminatory performance of the protein-based model with that of the Early Cancer Detection Test (EarlyCDT)-Lung and the PLCOm2012 model using receiver operating characteristics analysis and by estimating models’ sensitivity. All tests were 2-sided.
Results
The area under the curve for the protein-based risk model in the validation sample was 0.75 (95% confidence interval [CI] = 0.70 to 0.81) compared with 0.64 (95% CI = 0.57 to 0.70) for the PLCOm2012 model (Pdifference = .001). The EarlyCDT-Lung had a sensitivity of 14% (95% CI = 8.2% to 19%) and a specificity of 86% (95% CI = 81% to 92%) for incident lung cancer. At the same specificity of 86%, the sensitivity for the protein-based risk model was estimated at 49% (95% CI = 41% to 57%) and 30% (95% CI = 23% to 37%) for the PLCOm2012 model.
Conclusion
Circulating proteins showed promise in predicting incident lung cancer and outperformed a standard risk prediction model and the commercialized EarlyCDT-Lung.