Protein profiles and associated biological pathways among different etiologies of chronic kidney disease: new insights from DAPA-CKD
Nephrology Dialysis Transplantation, 2025
André de la Rambelje M., Beldhuis I., Heerspink H., Greasley P., Agren R., Hammarstedt A., Sjöström C., Voors A., Jongs N.
| Disease area | Application area | Sample type | Products |
|---|---|---|---|
Nephrology | Patient Stratification | Plasma |  Olink Explore 3072/384 |
Abstract
Background
We investigated circulating protein profiles and molecular pathways among various chronic kidney disease (CKD) etiologies to study its underlying molecular heterogeneity.
Methods
We conducted a proteomic biomarker analysis in the DAPA-CKD trial recruiting adults with and without type 2 diabetes with an eGFR of 25 to 75 mL/min/1.73m2 and a UACR of 200 to 5000 mg/g. A total of 2926 proteins were analyzed by Olink Explore in plasma samples collected at baseline. Proteins associated with diabetic kidney disease (DKD), glomerulonephritis (GN), and hypertensive nephropathy (HTN) were identified using linear models to compare each CKD etiology against the others.
Results
Of 4304 randomized participants, baseline plasma proteomic profiles were available for 2485 participants (57.7%). Compared to patients without DKD, those with DKD had higher plexin B2 (PLXNB2; log2 fold difference 0.34, P < 0.001), vascular adhesion protein-1 (VAP-1; log2 fold difference 0.34, P < 0.001), and kidney injury molecule-1 (KIM-1; log2 fold difference 0.79, P < 0.001), suggesting involvement of immune activation, oxidative stress, and tubular damage. Based on these molecular pathways, interleukin-6 was identified as an upstream regulator in DKD. In an external database of the Kidney Precision Medicine Project, PLXNB2 and VAP-1 were also elevated in DKD compared to non-DKD (log2 fold difference 0.41 and 0.42, respectively). In GN, levels of nephrin, a key slit diaphragm protein, were lower (log2 fold difference -0.27, P < 0.001). Furthermore, receptor for advanced glycation end products (RAGE; log2 fold difference 0.28, P < 0.001) and heparan sulfate 6-O-sulfotransferase 2 (HS6ST2; log2 fold difference 0.2, P < 0.05) were higher, suggesting glycocalyx disruption and inflammation. In HTN, epiregulin, a member of the epidermal growth factor family, was higher compared to other CKD etiologies.
Conclusion
In conclusion, our study highlights distinct proteomic differences in patients with DKD, GN and HTN. These findings may aid to unravel the heterogeneous underlying molecular phenotype of CKD pathophysiology.